Commits · master · Jonathan CRUARD / singleCell

14 Sep, 2021 4 commits
- Update Rscript_wrapper.sh · 19324956
  Jonathan CRUARD authored Sep 14, 2021
  
  19324956
- Update Rscript_wrapper.sh · 10310a75
  Jonathan CRUARD authored Sep 14, 2021
  
  10310a75
- Update Rscript_wrapper.sh · e7252a61
  Jonathan CRUARD authored Sep 14, 2021
  
  e7252a61
- Update Rscript_wrapper.sh · c5d7c439
  Jonathan CRUARD authored Sep 14, 2021
  
  c5d7c439
23 Jun, 2021 1 commit
- Update env name · 787dd9d9
  Jonathan CRUARD authored Jun 23, 2021
  
  787dd9d9
17 Dec, 2020 1 commit
- brought back arg to use or not scrublet autothreshold · c64d4b1b
  Jonathan CRUARD authored Dec 17, 2020
  
  c64d4b1b
08 Dec, 2020 4 commits
- test the --force argument · aec35a50
  Jonathan CRUARD authored Dec 08, 2020
  
  aec35a50
- fixed suffix striping when not using soupX, added argument to avoid gene symbol update · f2a66c2b
  Jonathan CRUARD authored Dec 08, 2020
  
  f2a66c2b
- debug · e61a9149
  Jonathan CRUARD authored Dec 08, 2020
  
  e61a9149
- added some libraries to loading, lil' update on README · 71997037
  Jonathan CRUARD authored Dec 08, 2020
  
  71997037
13 Nov, 2020 3 commits
- corrected the metadata loading too · 6f61ec5c
  Jonathan CRUARD authored Nov 13, 2020
  
  6f61ec5c
- fixed loader for case in which SC_RNA_COUNTER_CS folder is present in the input directory · 3edd5771
  Jonathan CRUARD authored Nov 13, 2020
  
  3edd5771
- hotfix need to do it better · be0e80fc
  Jonathan CRUARD authored Nov 13, 2020
  
  be0e80fc
10 Nov, 2020 2 commits
- hotfix try · 4cad7c85
  Jonathan CRUARD authored Nov 10, 2020
  
  4cad7c85
- forgot to replace with new name · 9eb8e253
  Jonathan CRUARD authored Nov 10, 2020
  
  9eb8e253
05 Nov, 2020 10 commits
- updated names and regrouped them into a single object · b38a32cf
  Jonathan CRUARD authored Nov 05, 2020
  
  b38a32cf
- fixed DF · 6a5ffc94
  Jonathan CRUARD authored Nov 05, 2020
  
  6a5ffc94
- now overwrite the old version used in a precedent run · b2ea3094
  Jonathan CRUARD authored Nov 05, 2020
  
  b2ea3094
- was loading an old environnement · e89f31d4
  Jonathan CRUARD authored Nov 05, 2020
  
  e89f31d4
- removed strip.suffix arg (seems to depend on version of Seurat) and replaced it by a manual removal · 7258610a
  Jonathan CRUARD authored Nov 05, 2020
  
  7258610a
- fixed node selection? · 40cc6a39
  Jonathan CRUARD authored Nov 05, 2020
  
  40cc6a39
- fixed line break · 46d36695
  Jonathan CRUARD authored Nov 05, 2020
  
  46d36695
- more debug · 2129b552
  Jonathan CRUARD authored Nov 05, 2020
  
  2129b552
- debug · 2dd9b1b3
  Jonathan CRUARD authored Nov 05, 2020
  
  2dd9b1b3
- test with a temp file for the script · b6aaaf82
  Jonathan CRUARD authored Nov 05, 2020
  
  b6aaaf82
04 Nov, 2020 12 commits
- another one · 1deebafa
  Jonathan CRUARD authored Nov 04, 2020
  
  1deebafa
- test · ff34fbf0
  Jonathan CRUARD authored Nov 04, 2020
  
  ff34fbf0
- test 4 · 41ed9f69
  Jonathan CRUARD authored Nov 04, 2020
  
  41ed9f69
- test 3 · e6e49cc7
  Jonathan CRUARD authored Nov 04, 2020
  
  e6e49cc7
- test debug 2 · d3b021a7
  Jonathan CRUARD authored Nov 04, 2020
  
  d3b021a7
- debug test · 167a3897
  Jonathan CRUARD authored Nov 04, 2020
  
  167a3897
- renamed some vars · 04a44e5b
  Jonathan CRUARD authored Nov 04, 2020
  
  04a44e5b
- relocated sh script for preprocess launching to this repo, added viridis to installer · d7b743e4
  Jonathan CRUARD authored Nov 04, 2020
  
  d7b743e4
- fct to detect the vars unique in groups, also added %!in% fct · becf01a6
  Jonathan CRUARD authored Nov 04, 2020
  
  becf01a6
- fixed path after merge of the total_reboot branch · b9241f92
  Jonathan CRUARD authored Nov 04, 2020
  
  b9241f92
- updated loader, added some automated markers and heatmap makers · 2b695e9e
  Jonathan CRUARD authored Nov 04, 2020
  
  2b695e9e
- a test file · 45e6d77c
  Jonathan CRUARD authored Nov 04, 2020
  
  45e6d77c
03 Nov, 2020 3 commits
- added a wrapper for Rscript qsub · f0eefcff
  Jonathan CRUARD authored Nov 03, 2020
  
  f0eefcff
- Merge branch 'total_reboot' into 'master' · 0b0a7a17
  Jonathan CRUARD authored Nov 03, 2020
```
Total reboot

See merge request !1
```
  0b0a7a17
- fixed typo in normalisation, added avg expression heatmap and metadata... · 81525b73
  Jonathan CRUARD authored Nov 03, 2020
```
fixed typo in normalisation, added avg expression heatmap  and metadata updater (needs tests), added nulear_lnc to the genelists
```
  81525b73