Commit 29a14737 authored by Bagueneau Mathias's avatar Bagueneau Mathias
Browse files

- Update des messages d'aide et du ReadMe

parent fb615422
......@@ -89,18 +89,27 @@ You could choose a factor and the number of top genes you want to be shown.
The HeatMap also use the pre-calculated markers for each factors (like the data table from the visualisation page).
The HeatMap is exportable in .svg.
The HeatMap is exportable in .png.
## Genes Page
Page in progress...
The Genes page allows you to do a Gene Ontology and have information about genes.
You have to choose a factor, group(s) of it, and ontology. Three type of ontology are available : Biological Process, Molecular Function and Cellular Component.
Then you will have a graph (you can also change the graph mode), and two tables.
The first table gives you the list of the genes present in your selection.
The second one gives you the ontology.
The Gene Ontology also use the pre-calculated markers for each factors (like the data table from the visualisation page and the HeatMap).
All of the outputs are exportable : in .png for the graph and in .csv for the tables.
## Compare Page
In this page, you could compare groups from factors with each other.
You could choose multiple groups, and also add a second factor to filter with.
Then you could Find the significant markers of your selection.
Then you could Find the significant markers of your selection, or also do a Gene Ontology like in the Genes page (but here, the markers are calculated before the ontology).
Be carefull to not select redondant cells.
Like the Visualisation page, you have a Control panel to change some parameters to the graphs (like graph mode, point size, ...) and choose what you want to see (factors, features, ...).
......
......@@ -596,7 +596,7 @@ server <- function(input, output, session) {
})
output$dl_ontodt <- downloadHandler(
filename = function() {
paste0(file_path_sans_ext(filedata$name),"_onto_datatable_",input$fsel4,".csv")
paste0(file_path_sans_ext(filedata$name),"_onto_",input$ontology,"_datatable_",input$fsel4,".csv")
},
content = function(file) {
write.csv(dtontoData(), file)
......@@ -981,7 +981,7 @@ The HeatMap is exportable in .svg.", title=strong("HeatMap page Help"), easyClos
})
output$dlonto_compare <- downloadHandler(
filename = function() {
paste0(filedata$name,"_dtontology_",input$fsel2,".csv")
paste0(filedata$name,"_onto_",input$ontology2,"_datatable_",input$fsel2,".csv")
},
content = function(file) {
write.csv(dfo, file, row.names=FALSE)
......
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