Commit b480c231 authored by Bagueneau Mathias's avatar Bagueneau Mathias
Browse files

- Update ReadMe

parent ea6931a1
......@@ -52,6 +52,8 @@ Here the list of the required packages for Shiny SChnurR :
* clusterProfiler
* org.Hs.eg.db
* tools
* PANTHER.db
* topGO
All of this packages are installed with the provided script **install.R** and are up-to-date.
......@@ -82,14 +84,14 @@ It shows all significant markers, calculated with the test MAST. You could affin
All of the outputs are exportable : in .svg for the graphs and in .csv for the table.
## HeatMap Page
## Heatmap Page
The HeatMap page allows you to do a HeatMap with many parameters.
The Heatmap page allows you to do a Heatmap with many parameters.
You could choose a factor and the number of top genes you want to be shown.
The HeatMap also use the pre-calculated markers for each factors (like the data table from the visualization page).
The Heatmap also use the pre-calculated markers for each factors (like the data table from the visualization page).
The HeatMap is exportable in .png.
The Heatmap is exportable in .png.
## Genes Page
......@@ -100,7 +102,7 @@ Then you will have a graph (you can also change the graph mode), and two tables.
The first table gives you the list of the genes present in your selection.
The second one gives you the ontology.
The Gene Ontology also use the pre-calculated markers for each factors (like the data table from the visualization page and the HeatMap).
The Gene Ontology also use the pre-calculated markers for each factors (like the data table from the visualization page and the Heatmap).
All of the outputs are exportable : in .png for the graph and in .csv for the tables.
......
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