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Bagueneau Mathias
Shiny SChnurR
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Apr 25, 2019
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Bagueneau Mathias
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# Shiny SChnurR
#
~
Shiny SChnurR

</br>
> **[Link of the tool][Link of the tool]**
**Table of Contents**
[TOC]
# Installation
# - Installation
To use Shiny SChnurR, you first need to :
1.
Install
[
R
][
R
]
, version 3.5 or greater
2.
Install some packages (
*cf Required Packages part*
), like
**Shiny**
3.
Download all the files of this project
Hello
# Tutorial
Then, you simply need to launch R and this command :
```
r
shiny
::
runApp
(
'/my/path/to/my/folder/which/contain/all/the/files'
)
```
The
*
rds files used must have been made with the pipeline available at this adress :
## Required Packages
Here the list of the required packages for Shiny SChnurR :
*
[
shiny
][
shiny
]
*
shinythemes
*
[
Seurat
][
Seurat
]
:
**The version 3 is required !**
*
[
sctransform
][
sctransform
]
*
dplyr
*
ggplot2
*
viridis
*
shinyjs
*
stringr
*
plotly
*
BiocManager
*
shinydashboard
*
shinyjs
*
DT
*
RColorBrewer
*
MAST
*
data.table
*
clusterProfiler
*
org.Hs.eg.db
# - Tutorial
Shiny SChnurR is a visualisation tool. Many options are available into the different pages.
Hello
## Visualisation Page
Hey !
Redaction in progress...
## HeatMap Page
Hello
Redaction in progress...
## Genes Page
Hello
## Compare Page
Redaction in progress...
## Compare Page
Hello
Redaction in progress...
## Pipeline Page
Redaction in progress...
Hello
----
[
R
]:
https://www.r-project.org/
"R"
[
Seurat
]:
http://https://satijalab.org/seurat/install.html
"Seurat"
[
sctransform
]:
https://rawgit.com/ChristophH/sctransform/master/inst/doc/seurat.html
"sctransform"
[
Link of the tool
]:
https://shiny-bird.univ-nantes.fr/jbalberge/schnurr/
"Link of the tool"
[
shiny
]:
https://shiny.rstudio.com/
"shiny"
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