- Début de rédaction du ReadMe

README.md

 
-# Shiny SChnurR
+# ~ Shiny SChnurR
 
 ![](https://zupimages.net/up/19/17/rcn0.png)
 
+</br>
+> **[Link of the tool][Link of the tool]**
 
-**Table of Contents**
 
-[TOC]
-# Installation
+# - Installation
 
+To use Shiny SChnurR, you first need to :
 
+1. Install [R][R], version 3.5 or greater
+2. Install some packages (*cf Required Packages part* ), like **Shiny**
+3. Download all the files of this project
 
-Hello
-# Tutorial
 
+Then, you simply need to launch R and this command :
+```r
+shiny::runApp('/my/path/to/my/folder/which/contain/all/the/files')
+```
+
+The *rds files used must have been made with the pipeline available at this adress :
+
+## Required Packages
+
+Here the list of the required packages for Shiny SChnurR :
+
+* [shiny][shiny]
+* shinythemes
+* [Seurat][Seurat]  : **The version 3 is required !**
+* [sctransform][sctransform]
+* dplyr
+* ggplot2
+* viridis
+* shinyjs
+* stringr
+* plotly
+* BiocManager
+* shinydashboard
+* shinyjs
+* DT
+* RColorBrewer
+* MAST
+* data.table
+* clusterProfiler
+* org.Hs.eg.db
+
+# - Tutorial
+
+Shiny SChnurR is a visualisation tool. Many options are available into the different pages.
 
-Hello
 ## Visualisation Page
 
-Hey !
+Redaction in progress...
 
 
 ## HeatMap Page
 
-Hello 
+Redaction in progress...
 
 
 ## Genes Page
 
-Hello
-## Compare Page
+Redaction in progress...
 
+## Compare Page
 
-Hello
+Redaction in progress...
 
 ## Pipeline Page
 
+Redaction in progress...
 
-Hello
-                
 ----
+
+[R]: https://www.r-project.org/ "R"
+[Seurat]: http://https://satijalab.org/seurat/install.html "Seurat"
+[sctransform]: https://rawgit.com/ChristophH/sctransform/master/inst/doc/seurat.html "sctransform"
+[Link of the tool]: https://shiny-bird.univ-nantes.fr/jbalberge/schnurr/ "Link of the tool"
+[shiny]: https://shiny.rstudio.com/ "shiny"