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Bagueneau Mathias
Shiny SChnurR
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c9ada034
Commit
c9ada034
authored
May 15, 2019
by
Bagueneau Mathias
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Merge branch 'master' of
https://gitlab.univ-nantes.fr/MathBgn/myelome
parents
62d302c5
a46ac9a7
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README.md
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@@ -28,6 +28,19 @@ shiny::runApp('/my/path/to/my/folder/which/contain/all/the/files')
The .rds files used must have been made with the analysis pipeline available at this adress :
https://gitlab.univ-nantes.fr/E176261N/singlecell
## Conda install
To install SChnurR in a conda environment, run the following commands:
```
conda create -n schnurr -c conda-forge -c bioconda r=3.5 \
r-shiny r-shinythemes r-seurat r-viridis r-shinyjs r-plotly \
r-shinydashboard r-stringr r-dt r-rcolorbrewer r-data.table \
r-biocmanager bioconductor-mast bioconductor-org.hs.eg.db \
bioconductor-panther.db bioconductor-topgo
# TODO add clusterprofiler
```
## Required Packages
Here the list of the required packages for Shiny SChnurR :
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