Commit 6808efcb authored by Samuel BERTRAND's avatar Samuel BERTRAND 🐉

Update README.md

parent c256ec99
......@@ -51,7 +51,7 @@ The function provide various results as follow. First a graphical representation
Then two result tables a provided. One corresponding to the selected features called “result$featuresSelection” and the results for all variables called “result$Ttest” or “result$Wtest” depending on the statistical significance test demanded. All those tables are structures as follow:
<center><table>
<table>
<tr>
<td></td>
<th>var<sub>1</sub></th>
......@@ -74,7 +74,7 @@ Then two result tables a provided. One corresponding to the selected features ca
<td></td>
<td></td>
<td></td></tr>
</table></center>
</table>
The variables represented in pink in the volcano plot are those listed in the “result$featuresSelection” table. The parameters used for features selection can be modified within the function arguments “lim.FC” and “lim.pVal”.
......@@ -90,3 +90,50 @@ The function provide various results as follow. First a graphical representation
<img src='https://gitlab.univ-nantes.fr/bertrand-s-1/pochermon/raw/master/Pictures/PCA.png' />
<img src='https://gitlab.univ-nantes.fr/bertrand-s-1/pochermon/raw/master/Pictures/SUSplot.png' />
Again two result tables a provided. One corresponding to the selected features called “result$featuresSelection” and the results for all variables called “result$OPLS.DA”. Those tables are structures as follow:
<table>
<tr>
<td></td>
<th>var<sub>1</sub></th>
<th>var<sub>2</sub></th>
<th>...</th>
<th>var<sub>i</sub></th>
<th>...</th>
</tr>
<tr>
<th>OPLS.DA.VIP1 (Fungi1 / Fungi1VSFungi2)</th>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td></tr>
<tr>
<th>OPLS.DA.VIP1 (Fungi2 / Fungi1VSFungi2)</th>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td></tr>
<tr>
<th>OPLS.DA.p1 (Fungi1 / Fungi1VSFungi2)</th>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td></tr>
<tr>
<th>OPLS.DA.p2 (Fungi2 / Fungi1VSFungi2)</th>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td></tr>
<tr>
<th>OPLS.DA.p1+p2</th>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td></tr>
</table>
\ No newline at end of file
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