Commit 8614ad83 authored by Samuel BERTRAND's avatar Samuel BERTRAND 🐉

Mettre à jour README.md

parent 6b82491d
<h1>PocheRmon (Projected Orthogonalized CHemical Encounter MONitoring) for mixed metabolome analysis</h1>
The PocheRmon function is is provided primarily to be able to use the POCHEMON data analysis strategy using a freely available software (R, CRAN).
The PocheRmon function is provided primarily to be able to use the POCHEMON data analysis strategy using a freely available software (R, CRAN).
This strategy was first reported in
Jansen, J.J., Blanchet, L., Buydens, L.M.C., Bertrand, S., Wolfender, J.-L., 2015. Projected Orthogonalized CHemical Encounter MONitoring (POCHEMON) for microbial interactions in co-culture. Metabolomics 11(4), 908-919, http://doi.org/10.1007/s11306-014-0748-5
<h1>How to use it</h1>
<h2>Download the PocheRmon module</h2>
The last version of the module can be downloaded here: https://gitlab.univ-nantes.fr/bertrand-s-1/pochermon/tree/master/R
<h2>load the PocheRmon module</h2>
<h2>Load the PocheRmon module</h2>
To load the module in your R environment, do the following step:
`source("PocheRmon1.0.R")`
Is some packages are not yet installed in your R environment, they sould be automatically downloaded. Then required packages will be
installed_packages<-installed.packages()[,"Package"]
if(length(which(installed_packages == "ropls"))==0){
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ropls", version = "3.8")
}
if(length(which(installed_packages == "Matrix"))==0){
install.packages("Matrix")
}
if(length(which(installed_packages == "pracma"))==0){
install.packages("pracma")
}
if (length(which(installed_packages == "GPArotation"))==0){
install.packages("GPArotation")
}
if (length(which(installed_packages == "VennDiagram"))==0){
install.packages("VennDiagram")
}
rm(installed_packages)
require(ropls)
require(Matrix)
require(pracma)
require(GPArotation)
require(stats)
require(VennDiagram)
<h2>Load the data</h2>
`source("PocheRmon1.0.R")`
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