Commit 26d07921 authored by Damien VINTACHE's avatar Damien VINTACHE
Browse files

définition de l'environnement virtuel

parent d0267c2c
......@@ -2,7 +2,8 @@
# creation de l'environnement conda
echo $PATH
conda create -yq -n rnaSeqQuantif snakemake perl fastqc multiqc cutadapt prinseq star htseq gzip -c bioconda -c conda-forge -c ostrokach
conda create -yq -n rnaSeqQuantif bioconductor-deseq2 bioconductor-biomart -c bioconda
source activate rnaSeqQuantif
conda install -yq bioconductor-deseq2 bioconductor-biomart -c bioconda
conda install -yq snakemake perl fastqc multiqc cutadapt prinseq star htseq gzip ncurses -c bioconda -c conda-forge -c ostrokach
source deactivate
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