Commit 2c846eae authored by Audrey BIHOUEE's avatar Audrey BIHOUEE
Browse files

Update for reference file missing

parent ee894775
......@@ -3,6 +3,7 @@
{
"name":"Ensembl_GRCh37",
"description":"Homo sapiens Ensembl GRCh37",
"STARindexDir":"CONFIG/genome",
"fasta":"CONFIG/genome/human_g1k_v37.chr22.fasta",
"gtf":"CONFIG/genome/chr22.gff",
"biomart":"feb2014.archive.ensembl.org,ENSEMBL_MART_ENSEMBL,hsapiens_gene_ensembl"
......
......@@ -52,6 +52,7 @@ else:
d["reference"] = dict()
d["reference"]["name"]="nameOfRef #match with scripts/corresIDorg.txt"
d["reference"]["description"]="Ref description"
d["reference"]["STARindexDir"]="</path/to/starindex>"
d["reference"]["fasta"]="</path/to/fastfile.fasta>"
d["reference"]["gtf"]="</path/to/gtffile.gtf>"
d["reference"]["biomart"]="feb2014.archive.ensembl.org,ENSEMBL_MART_ENSEMBL,hsapiens_gene_ensembl #for example"
......
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