Commit 2d51294e authored by Eric CHARPENTIER's avatar Eric CHARPENTIER 🐍
Browse files

fixed bug in annotation creation and put back 100 bases length for reads by default

parent 3f0f899b
......@@ -5,7 +5,7 @@
"cutadapt-forward":"AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC",
"cutadapt-reverse":"AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT",
"library-type":"reverse",
"read-length":"75",
"read-length":"100",
"align-cpu":"10",
"reference":
{
......
......@@ -221,7 +221,7 @@ if(nrow(DE.sel$isDE)>=10){
if(i==4) i<-1
}
ha<-HeatmapAnnotation(annot,col = colTopAnnot)
ha<-HeatmapAnnotation(df = annot,col = colTopAnnot)
DEgenes.names=rownames(DE.sel$isDE)
colFun<-c(ggplotColours,rainbow)
......@@ -259,7 +259,7 @@ if(nrow(DE.sel$isDE)>=10){
i<-i+1
if(i==4) i<-1
}
haByCompSelect<-HeatmapAnnotation(tempAnnot,col = colTopAnnotTemp)
haByCompSelect<-HeatmapAnnotation(df = tempAnnot,col = colTopAnnotTemp)
exprDESelect=exprDatT[DEgenes.names,sampleHtSelect,drop=FALSE]
exprDESelect.scaled=rowScale(exprDESelect,center=T,scaled=T)
exprDESelect.scaled<-na.omit(exprDESelect.scaled)
......
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