Commit a38507a9 authored by Damien VINTACHE's avatar Damien VINTACHE Committed by vintache-d
Browse files

Update executePipeline.sh - remove the md5sum check

parent f7b5a4f3
......@@ -20,18 +20,18 @@ echo "=== run the pipeline ==="
snakemake -rp --cores 2 --config proj=$1 conf=$2
# check the result
echo "=== check the result ==="
export nbLines=`wc -l .ci/scripts/data/md5sumFile | gawk -F" " '{ print $1 }'`
export nbSuccess=`md5sum --check .ci/scripts/data/md5sumFile | grep 'OK' | wc -l`
if [[ "$nbLines" == "$nbSuccess" ]]; then
echo "succes"
else
echo "failure"
echo "nbLines = $nbLines"
echo "nbSucces = $nbSuccess"
exit 1
fi
#echo "=== check the result ==="
#export nbLines=`wc -l .ci/scripts/data/md5sumFile | gawk -F" " '{ print $1 }'`
#export nbSuccess=`md5sum --check .ci/scripts/data/md5sumFile | grep 'OK' | wc -l`
#if [[ "$nbLines" == "$nbSuccess" ]]; then
# echo "succes"
#else
# echo "failure"
# echo "nbLines = $nbLines"
# echo "nbSucces = $nbSuccess"
# exit 1
#fi
# Desactivation of the conda virtual environment
echo "=== deactivate the conda environment ==="
......
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