Commit b096ee23 authored by Eric CHARPENTIER's avatar Eric CHARPENTIER 🐍
Browse files

fixed creation of report broken in last commit, updated readme

parent acd7143c
......@@ -27,13 +27,10 @@ The species specific resources files have to be downloaded manually if not human
### Cloning the repository
```bash
git clone "https://<login-univ>@gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline.git"
git clone "https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline.git"
cd RNAseq_quantif_pipeline
```
> **Note:**
> - Replace \<login-univ\> by your login "univ nantes" to access gitlab
### Install dependencies
In order to generate the two conda environments needed to run the pipeline, execute the installer:
......
......@@ -160,4 +160,4 @@ for pack in packages.split("\n"):
template = args.templateFile
output = Environment(loader=FileSystemLoader(os.path.dirname(template))).get_template(os.path.basename(template)).render(templateVars)
with open(args.output, "wb") as f:
f.write(output.efile_len
\ No newline at end of file
f.write(output.encode("utf-8"))
\ No newline at end of file
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