Commit c5ceda3f authored by Eric CHARPENTIER's avatar Eric CHARPENTIER 🐍
Browse files

Merge branch 'master' into 'master'

Ajout de outSAMattrRGline cf :...

See merge request !2
parents 777daa46 1f9bfa30
......@@ -216,7 +216,7 @@ rule star_PE:
params: cpu=config["align-cpu"]
conda: "CONDA/rnaSeqQuantif.yml"
shell: """
STAR --runThreadN {params.cpu} --genomeDir {GENOMEDIR} --readFilesCommand zcat --outFileNamePrefix {OUTPUTDIR}/Samples/{wildcards.sampleName}/STAR/{wildcards.sampleName} --readFilesIn {input.R1} {input.R2} --outSAMtype BAM SortedByCoordinate --outBAMsortingThreadN 6
STAR --runThreadN {params.cpu} --genomeDir {GENOMEDIR} --readFilesCommand zcat --outFileNamePrefix {OUTPUTDIR}/Samples/{wildcards.sampleName}/STAR/{wildcards.sampleName} --readFilesIn {input.R1} {input.R2} --outSAMtype BAM SortedByCoordinate --outBAMsortingThreadN 6 --outSAMattrRGline ID:{wildcards.sampleName} SM:{wildcards.sampleName} LB:{wildcards.sampleName} CN:PFBirdNantes
"""
......
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