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Commit ced81cf7 authored by Eric CHARPENTIER's avatar Eric CHARPENTIER 🐍
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updated genome paths in references.json

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CONFIG/references.json
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......@@ -3,18 +3,18 @@
{
"name":"Ensembl_GRCh38",
"description":"Homo sapiens Ensembl GRCh38",
"STARindexDir":"/ceph-recherche/resources/species/human/ensembl/release-99/index-star-2.7.3a",
"fasta":"/ceph-recherche/resources/species/human/ensembl/release-99/index-star-2.7.3a/Homo_sapiens.GRCh38.dna.toplevel.fa",
"gtf":"/ceph-recherche/resources/species/human/ensembl/release-99/Homo_sapiens.GRCh38.99.gtf",
"STARindexDir":"/LAB-DATA/BiRD/resources/species/human/ensembl/release-99/index-star-2.7.3a",
"fasta":"/LAB-DATA/BiRD/resources/species/human/ensembl/release-99/index-star-2.7.3a/Homo_sapiens.GRCh38.dna.toplevel.fa",
"gtf":"/LAB-DATA/BiRD/resources/species/human/ensembl/release-99/Homo_sapiens.GRCh38.99.gtf",
"biomart":"99,hsapiens_gene_ensembl"
},
"Ensembl_GRCm38":
{
"name":"Ensembl_GRCm38",
"description":"Mus musculus Ensembl GRCm38",
"STARindexDir":"/ceph-recherche/resources/species/mouse/ensembl/release-99/index-star-2.7.3a",
"fasta":"/ceph-recherche/resources/species/mouse/ensembl/release-99/index-star-2.7.3a/Mus_musculus.GRCm38.dna.toplevel.fa",
"gtf":"/ceph-recherche/resources/species/mouse/ensembl/release-99/Mus_musculus.GRCm38.99.gtf",
"STARindexDir":"/LAB-DATA/BiRD/resources/species/mouse/ensembl/release-99/index-star-2.7.3a",
"fasta":"/LAB-DATA/BiRD/resources/species/mouse/ensembl/release-99/index-star-2.7.3a/Mus_musculus.GRCm38.dna.toplevel.fa",
"gtf":"/LAB-DATA/BiRD/resources/species/mouse/ensembl/release-99/Mus_musculus.GRCm38.99.gtf",
"biomart":"99,mmusculus_gene_ensembl"
},
"Ensembl_GRCh37_testdata":
......
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