Commit eb2db90e authored by Eric CHARPENTIER's avatar Eric CHARPENTIER 🐍
Browse files

changed treated condition name. update multiqc to from 1.6 to 1.9

parent 295821f0
......@@ -9,7 +9,7 @@ dependencies:
- cutadapt=1.18
- fastqc=0.11.8
- htseq=0.12.4
- multiqc=1.6
- multiqc=1.9
- numpy=1.14
- pandas=0.23.4
- prinseq=0.20.4
......
......@@ -34,26 +34,26 @@
"condition": "CT"
},
{
"name": "96_BEZ_1_chr22",
"condition": "BEZ"
"name": "96_TREATED_1_chr22",
"condition": "TREATED"
},
{
"name": "97_BEZ_2_chr22",
"condition": "BEZ"
"name": "97_TREATED_2_chr22",
"condition": "TREATED"
},
{
"name": "98_BEZ_3_chr22",
"condition": "BEZ"
"name": "98_TREATED_3_chr22",
"condition": "TREATED"
},
{
"name": "99_BEZ_4_chr22",
"condition": "BEZ"
"name": "99_TREATED_4_chr22",
"condition": "TREATED"
}
],
"comparisons":
{
"BEZ__vs__CT": {
"condition1": "BEZ",
"TREATED__vs__CT": {
"condition1": "TREATED",
"condition2": "CT"
}
}
......
......@@ -97,7 +97,7 @@
]
},
{
"sample": "96_BEZ_1_chr22",
"sample": "96_TREATED_1_chr22",
"files": [
{
"id": "p5",
......@@ -107,13 +107,13 @@
"split": "1",
"forward": {
"md5filename": "4df11e865c839485d5bab715ebece6e4",
"path": "shortfastq/96_BEZ_1_chr22_AAAAAAAA_L001_R1_001.fastq.gz",
"path": "shortfastq/96_TREATED_1_chr22_AAAAAAAA_L001_R1_001.fastq.gz",
"side": 1,
"file-size": 37139
},
"reverse": {
"md5filename": "123ebaa7bdfe834bfeb0686198d041f2",
"path": "shortfastq/96_BEZ_1_chr22_AAAAAAAA_L001_R2_001.fastq.gz",
"path": "shortfastq/96_TREATED_1_chr22_AAAAAAAA_L001_R2_001.fastq.gz",
"side": 2,
"file-size": 37277
}
......@@ -121,7 +121,7 @@
]
},
{
"sample": "97_BEZ_2_chr22",
"sample": "97_TREATED_2_chr22",
"files": [
{
"id": "p6",
......@@ -131,13 +131,13 @@
"split": "1",
"forward": {
"md5filename": "8272b1e3a8ce7b81c1bd8726d6398158",
"path": "shortfastq/97_BEZ_2_chr22_AAAAAAAA_L001_R1_001.fastq.gz",
"path": "shortfastq/97_TREATED_2_chr22_AAAAAAAA_L001_R1_001.fastq.gz",
"side": 1,
"file-size": 35121
},
"reverse": {
"md5filename": "3d01a82c37b415847a370b558083b55c",
"path": "shortfastq/97_BEZ_2_chr22_AAAAAAAA_L001_R2_001.fastq.gz",
"path": "shortfastq/97_TREATED_2_chr22_AAAAAAAA_L001_R2_001.fastq.gz",
"side": 2,
"file-size": 35467
}
......@@ -145,7 +145,7 @@
]
},
{
"sample": "98_BEZ_3_chr22",
"sample": "98_TREATED_3_chr22",
"files": [
{
"id": "p7",
......@@ -155,13 +155,13 @@
"split": "1",
"forward": {
"md5filename": "a3cb8c057d1882938a837f4ac87b46d4",
"path": "shortfastq/98_BEZ_3_chr22_AAAAAAAA_L001_R1_001.fastq.gz",
"path": "shortfastq/98_TREATED_3_chr22_AAAAAAAA_L001_R1_001.fastq.gz",
"side": 1,
"file-size": 49145
},
"reverse": {
"md5filename": "c7d687c85b03383923762e8c480e7d2c",
"path": "shortfastq/98_BEZ_3_chr22_AAAAAAAA_L001_R2_001.fastq.gz",
"path": "shortfastq/98_TREATED_3_chr22_AAAAAAAA_L001_R2_001.fastq.gz",
"side": 2,
"file-size": 49335
}
......@@ -169,7 +169,7 @@
]
},
{
"sample": "99_BEZ_4_chr22",
"sample": "99_TREATED_4_chr22",
"files": [
{
"id": "p8",
......@@ -179,13 +179,13 @@
"split": "1",
"forward": {
"md5filename": "4cc4aa09c291332c2eb589f24ca059d3",
"path": "shortfastq/99_BEZ_4_chr22_AAAAAAAA_L001_R1_001.fastq.gz",
"path": "shortfastq/99_TREATED_4_chr22_AAAAAAAA_L001_R1_001.fastq.gz",
"side": 1,
"file-size": 32302
},
"reverse": {
"md5filename": "5da39abc26f5340d4e3a7a7ba1d51dbc",
"path": "shortfastq/99_BEZ_4_chr22_AAAAAAAA_L001_R2_001.fastq.gz",
"path": "shortfastq/99_TREATED_4_chr22_AAAAAAAA_L001_R2_001.fastq.gz",
"side": 2,
"file-size": 32580
}
......
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