Commit f8afb27c authored by Eric CHARPENTIER's avatar Eric CHARPENTIER 🐍
Browse files

added version script (forgotten for last commit)

parent eed677aa
snakemake --version | sed -e "s/^/Snakemake: /"
python --version 2>&1 | sed -e "s/^Python/Python:/"
STAR --version | sed -e "s/^/STAR: /"
samtools --version 2>&1 | head -1 | sed -e "s/samtools/samtools:/"
fastqc --version 2>&1 | sed -e "s/FastQC/FastQC:/"
cutadapt --version | sed -e "s/^/cutadapt: /"
multiqc --version 2>&1 | grep "^multiqc" | sed -e "s/multiqc, version/multiQC:/"
Rscript --version 2>&1 | sed -e "s/.*version/R:/"
Rscript -e "packageVersion('DESeq2')" | sed -e "s/\[1\]/R-DESeq2:/"
Rscript -e "packageVersion('clusterProfiler')" | sed -e "s/\[1\]/R-clusterProfiler:/"
Rscript -e "packageVersion('ComplexHeatmap')" | sed -e "s/\[1\]/R-ComplexHeatmap:/"
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