Commits · ad4c1c77c2a8c9e9f3ae5fff9f0d388bd06b2366 · bird_pipeline_registry / RNAseq-quantif-pipeline

08 Jul, 2019 1 commit
- fixed creation of clustDE output and input when no DEG found 2 - thx atorres · ad4c1c77
  Eric CHARPENTIER authored Jul 08, 2019
  
  ad4c1c77
28 Jun, 2019 1 commit
- updated README with troubleshooting for PS1 unbound variable bug · 441d694b
  Eric CHARPENTIER authored Jun 28, 2019
  
  441d694b
04 Jun, 2019 1 commit
- fixed names of DEG genes in volcano-plot · 88b5728f
  Eric CHARPENTIER authored Jun 04, 2019
  
  88b5728f
03 Jun, 2019 1 commit
- added volcano plots to report, changed heatmap of DEG from full samples to... · 047e7425
  Eric CHARPENTIER authored Jun 03, 2019
```
added volcano plots to report, changed heatmap of DEG from full samples to samples only included in comparison
```
  047e7425
12 Nov, 2018 2 commits
- updated readme · 6ae84def
  Eric CHARPENTIER authored Nov 12, 2018
  
  6ae84def
- updated readme · 459a7375
  Eric CHARPENTIER authored Nov 12, 2018
  
  459a7375
09 Nov, 2018 1 commit
- refactoring of de analysis done · 6a0d0070
  Eric CHARPENTIER authored Nov 09, 2018
  
  6a0d0070
08 Nov, 2018 1 commit
- done with snakefile refactoring · 43d57735
  Eric CHARPENTIER authored Nov 08, 2018
  
  43d57735
07 Nov, 2018 1 commit
- added annotations to run_deseq script · 777daa46
  Eric CHARPENTIER authored Nov 07, 2018
  
  777daa46
03 Oct, 2018 2 commits
- Merge branch 'develop' : specify conda environment in snakemake rules, add report · c568a029
  Damien VINTACHE authored Oct 03, 2018
  
  c568a029
- ajout de l'environnement CONDA/rnaSeqQuantif.yml pour la règle buildReport · 7c9b59d2
  Damien VINTACHE authored Oct 03, 2018
  
  7c9b59d2
28 Sep, 2018 3 commits
- added project name in config.json · 1b97d658
  Eric CHARPENTIER authored Sep 28, 2018
  
  1b97d658
- Merge branch 'develop' of... · dc40b301
  Eric CHARPENTIER authored Sep 28, 2018
```
Merge branch 'develop' of https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline into develop
```
  dc40b301
- added report creation · 9c57e669
  Eric CHARPENTIER authored Sep 28, 2018
  
  9c57e669
26 Sep, 2018 1 commit
- new illumina.jar · 1d8de39e
  Audrey BIHOUEE authored Sep 26, 2018
  
  1d8de39e
25 Sep, 2018 6 commits
- Delete references.json · 8f418a78
  Audrey BIHOUEE authored Sep 25, 2018
  
  8f418a78
- Update config.json · e9eff515
  Audrey BIHOUEE authored Sep 25, 2018
  
  e9eff515
- Update config.json · 75b9afe5
  Audrey BIHOUEE authored Sep 25, 2018
  
  75b9afe5
- Merge branch 'develop' of... · 8f0fa15d
  Audrey BIHOUEE authored Sep 25, 2018
```
Merge branch 'develop' of https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline into develop
```
  8f0fa15d
- From 3 to 2 config files; updated snakefile with one more fastqc and multiQC on STAR · c0e49915
  Audrey BIHOUEE authored Sep 25, 2018
  
  c0e49915
- From 3 to 2 config files; updated snakefile with one more fastqc and multiQC on STAR · 006e01ca
  Audrey BIHOUEE authored Sep 25, 2018
  
  006e01ca
17 Sep, 2018 2 commits
- from 3 to 2 config files · 9fd10b17
  Audrey BIHOUEE authored Sep 17, 2018
  
  9fd10b17
- from 3 to 2 config files · 0ec0ca1e
  Audrey BIHOUEE authored Sep 17, 2018
  
  0ec0ca1e
13 Sep, 2018 5 commits
- Update README.md · 8f46e5aa
  Audrey BIHOUEE authored Sep 13, 2018
  
  8f46e5aa
- Update README.md · 72603bde
  Audrey BIHOUEE authored Sep 13, 2018
  
  72603bde
- Update README.md · b1f898a1
  Audrey BIHOUEE authored Sep 13, 2018
  
  b1f898a1
- Update README.md · d734ca19
  Audrey BIHOUEE authored Sep 13, 2018
  
  d734ca19
- Update README.md · 5a061476
  Audrey BIHOUEE authored Sep 13, 2018
  
  5a061476
20 Aug, 2018 6 commits
- suppression de fastqc dans l'environnement rnaSeqQuantif · 7dc56131
  Damien VINTACHE authored Aug 20, 2018
  
  7dc56131
- md5sumFile for en_US.locale · 2fbdf062
  Damien VINTACHE authored Aug 20, 2018
  
  2fbdf062
- add perl to the fastQC environment · 35f93a19
  Damien VINTACHE authored Aug 20, 2018
  
  35f93a19
- Merge branch 'develop' of... · 66cf7180
  Damien VINTACHE authored Aug 20, 2018
```
Merge branch 'develop' of https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline into develop
```
  66cf7180
- add definition for fastQC conda virtual environment · eafed1ff
  Damien VINTACHE authored Aug 20, 2018
  
  eafed1ff
- test with locale en_US.utf8 · 6d86f7ad
  Damien VINTACHE authored Aug 20, 2018
  
  6d86f7ad
17 Aug, 2018 2 commits
- add a new conda environment for fastqc execution - change encoding to C.UTF-8 for multiqc execution · 64f16ef6
  Damien VINTACHE authored Aug 17, 2018
  
  64f16ef6
- les environnements conda utilisés dans les règles snakemake sont créés à partir des fichiers yml · 0a9e267f
  Damien VINTACHE authored Aug 17, 2018
  
  0a9e267f
16 Aug, 2018 1 commit
- specification des channels dans la creation des environnements conda · e085f3dc
  Damien VINTACHE authored Aug 16, 2018
  
  e085f3dc
26 Jul, 2018 3 commits
- Merge branch 'develop' · c0ad8ed0
  Damien VINTACHE authored Jul 26, 2018
  
  c0ad8ed0
- md5sum check · 51c07695
  Damien VINTACHE authored Jul 26, 2018
  
  51c07695
- check the result files Results/Samples/*/*/*.out.bam.bai · 99808f8a
  Damien VINTACHE authored Jul 26, 2018
  
  99808f8a