Commits · ad4c1c77c2a8c9e9f3ae5fff9f0d388bd06b2366 · bird_pipeline_registry / RNAseq-quantif-pipeline

08 Jul, 2019 1 commit
- fixed creation of clustDE output and input when no DEG found 2 - thx atorres · ad4c1c77
  Eric CHARPENTIER authored Jul 08, 2019
  
  ad4c1c77
04 Jun, 2019 1 commit
- fixed names of DEG genes in volcano-plot · 88b5728f
  Eric CHARPENTIER authored Jun 04, 2019
  
  88b5728f
03 Jun, 2019 1 commit
- added volcano plots to report, changed heatmap of DEG from full samples to... · 047e7425
  Eric CHARPENTIER authored Jun 03, 2019
```
added volcano plots to report, changed heatmap of DEG from full samples to samples only included in comparison
```
  047e7425
12 Nov, 2018 1 commit
- updated readme · 459a7375
  Eric CHARPENTIER authored Nov 12, 2018
  
  459a7375
09 Nov, 2018 1 commit
- refactoring of de analysis done · 6a0d0070
  Eric CHARPENTIER authored Nov 09, 2018
  
  6a0d0070
08 Nov, 2018 1 commit
- done with snakefile refactoring · 43d57735
  Eric CHARPENTIER authored Nov 08, 2018
  
  43d57735
07 Nov, 2018 1 commit
- added annotations to run_deseq script · 777daa46
  Eric CHARPENTIER authored Nov 07, 2018
  
  777daa46
03 Oct, 2018 1 commit
- ajout de l'environnement CONDA/rnaSeqQuantif.yml pour la règle buildReport · 7c9b59d2
  Damien VINTACHE authored Oct 03, 2018
  
  7c9b59d2
28 Sep, 2018 1 commit
- added report creation · 9c57e669
  Eric CHARPENTIER authored Sep 28, 2018
  
  9c57e669
25 Sep, 2018 1 commit
- From 3 to 2 config files; updated snakefile with one more fastqc and multiQC on STAR · 006e01ca
  Audrey BIHOUEE authored Sep 25, 2018
  
  006e01ca
17 Aug, 2018 1 commit
- add a new conda environment for fastqc execution - change encoding to C.UTF-8 for multiqc execution · 64f16ef6
  Damien VINTACHE authored Aug 17, 2018
  
  64f16ef6
26 Jul, 2018 1 commit
- change rule htseq to use conda virtual environment · a069f6ac
  Damien VINTACHE authored Jul 26, 2018
  
  a069f6ac
25 Jul, 2018 1 commit
- utilisation de conda dans les commandes snakemake · 1772de5c
  Damien VINTACHE authored Jul 25, 2018
  
  1772de5c
17 Jul, 2018 2 commits
- création d'environnements conda dédiés aux régles snakemake · 3cc00a6c
  Damien VINTACHE authored Jul 17, 2018
  
  3cc00a6c
- utilisation de conda dans les commandes snakemake · fb1a9266
  Damien VINTACHE authored Jul 17, 2018
  
  fb1a9266
16 Apr, 2018 1 commit
- split conda environment · ecf5f312
  Damien VINTACHE authored Apr 16, 2018
  
  ecf5f312
09 Apr, 2018 2 commits
- execution de scripts sous jenkins : ajout de perl · ac7c2e47
  Damien VINTACHE authored Apr 09, 2018
  
  ac7c2e47
- script d'exécution · 48449711
  Damien VINTACHE authored Apr 09, 2018
  
  48449711
14 Feb, 2018 1 commit
- update prinsep for datatest · 3ced55e8
  Audrey BIHOUEE authored Feb 14, 2018
  
  3ced55e8
12 Feb, 2018 1 commit
- create bam index · 5a973df5
  Audrey BIHOUEE authored Feb 12, 2018
  
  5a973df5
09 Feb, 2018 2 commits
- clean scripts · 35acd10f
  Audrey BIHOUEE authored Feb 09, 2018
  
  35acd10f
- Clean config · f78308af
  Audrey BIHOUEE authored Feb 09, 2018
  
  f78308af
10 Jan, 2018 1 commit
- files cleaning · 775ac86f
  Audrey BIHOUEE authored Jan 10, 2018
  
  775ac86f
08 Sep, 2017 1 commit
- v2 with star alignment · 1a9a6953
  Audrey BIHOUEE authored Sep 08, 2017
  
  1a9a6953
30 Aug, 2017 1 commit
- pipeline.1.O without html report · b00973f9
  Audrey BIHOUEE authored Aug 30, 2017
  
  b00973f9