Modules/QC.md

+```
+magneto run qc --config target=single_assembly **snakemake.args
+```
+
 # Quality check and decontamination #
 
 Low quality sequence, artefacts , sequencing adaptors , duplicates , contaminants and others may compromised downstream analysis. Thus, pre-process metagenomics data is necessary. The QC modules apply a quality filter and a contaminant filter on metagenomic reads.