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---
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title: Binning
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---
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MAGs are reconstructed from metagenome assemblies using several binning tools :
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- [MetaBAT](https://bitbucket.org/berkeleylab/metabat/src/master/)
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- [Concoct](https://github.com/BinPro/CONCOCT)
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| ... | ... | @@ -15,7 +16,7 @@ Even if the use of several tools makes it possible to obtain a greater number an |
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Binning part can be started with the following command :
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```
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magneto run binning **snakemake.args
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magneto run binning --strategies SASB,SACB --profile config/slurm/ **snakemake.args
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```
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This will implicitly ran the [assembly](Modules/assembly) module.
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