Commit 1d96da1a authored by Eric CHARPENTIER's avatar Eric CHARPENTIER 🐍
Browse files

added sample condition and project in getBadSamplesForRun script

parent 47638fc7
......@@ -85,6 +85,6 @@ for i in range(1,len(samples)):
badSamples[samples[i]] = {"refseq_umi":refseq[i],"genes_detected":genes[i]}
print(str(len(badSamples))+" samples found below the threshold")
print("Sample\tRefseq_UMI\tgenes_detected")
print("Sample\tCondition\tProject\tRefseq_UMI\tgenes_detected")
for s in badSamples:
print(s+"\t"+str(badSamples[s]["refseq_umi"])+"\t"+str(badSamples[s]["genes_detected"]))
\ No newline at end of file
print(s+"\t"+config["samples"][s]["condition"]+"\t"+config["samples"][s]["project"]+str(badSamples[s]["refseq_umi"])+"\t"+str(badSamples[s]["genes_detected"]))
\ No newline at end of file
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