Commit 47638fc7 authored by Eric CHARPENTIER's avatar Eric CHARPENTIER 🐍
Browse files

added description for bad samples script

parent 27e3e4ec
......@@ -11,7 +11,7 @@ def eprint(*args, **kwargs):
print(*args, file=sys.stderr, **kwargs)
## Main
parser = argparse.ArgumentParser()
parser = argparse.ArgumentParser(description="Get all samples below minimum reads (UMIs) or minimum detected genes in a run.")
parser.add_argument('-r', '--rundir', metavar='DIR', help='Analysis working directory.', required=True, dest='rundir')
parser.add_argument('--minGenes', metavar='N', type=int, help='Minimum genes detected necessary for a sample to pass the filtering step in secondary analysis.', required=False, dest='minGenes')
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