Skip to content
GitLab
  • Menu
Projects Groups Snippets
  • /
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
  • Sign in / Register
  • SRP-pipeline SRP-pipeline
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
  • Issues 5
    • Issues 5
    • List
    • Boards
    • Service Desk
    • Milestones
  • Merge requests 2
    • Merge requests 2
  • CI/CD
    • CI/CD
    • Pipelines
    • Jobs
    • Schedules
  • Deployments
    • Deployments
    • Environments
    • Releases
  • Packages & Registries
    • Packages & Registries
    • Container Registry
  • Monitor
    • Monitor
    • Incidents
  • Analytics
    • Analytics
    • Value stream
    • CI/CD
    • Repository
  • Wiki
    • Wiki
  • Activity
  • Graph
  • Create a new issue
  • Jobs
  • Commits
  • Issue Boards
Collapse sidebar
  • bird_pipeline_registry
  • SRP-pipelineSRP-pipeline
  • Issues
  • #16
Closed
Open
Created May 29, 2020 by Philippe BORDRON@bordron-p-1Maintainer

count is now a reserved name

With recent snakemake version, I get the following error:

AttributeError in line 406 of /ceph-recherche/users/bordron-p-1/tmp/srp-pipeline/Snakefile:
invalid name for input, output, wildcard, params or log: count is reserved for internal use
  File "/ceph-recherche/users/bordron-p-1/tmp/srp-pipeline/Snakefile", line 406, in <module>

Tested with:

$ snakemake --version
5.18.1
Assignee
Assign to
Time tracking