Issues · bird_pipeline_registry / SRP-pipeline

New issue

Empty stringFunctionalEnrichment.tsv when making concurrent requests to stringDB

#18 · created May 29, 2020 by Philippe BORDRON
- CLOSED
- 2
updated Sep 16, 2021
problem with -i option for bcl2fastq2 demultiplexed fastq

#8 · created Jul 27, 2018 by Solenne DUMONT
- CLOSED
- 2
updated Sep 08, 2020
remove download tests in make_srp_config when building a ref manually

#15 · created Apr 21, 2020 by Eric CHARPENTIER
- CLOSED
- 1
updated Jul 27, 2020
count is now a reserved name

#16 · created May 29, 2020 by Philippe BORDRON
- CLOSED
- 1
- 0
updated May 29, 2020
broken conda environment

#17 · created May 29, 2020 by Philippe BORDRON
- CLOSED
- 1
- 0
updated May 29, 2020
test issue

#14 · created Dec 17, 2019 by Alban GAIGNARD
- CLOSED
- 0
updated Jan 21, 2020
add link to pipeline in report

#12 · created Nov 07, 2019 by Eric CHARPENTIER
- CLOSED
- 1
updated Nov 26, 2019
Since implementation of cutadapt, fastqc uses basename of samples with _trim

#10 · created Apr 16, 2019 by Eric CHARPENTIER
- CLOSED
- 1
updated May 02, 2019
clustDEgene.png is not produced by `deAnalysis.R` if there is only 2 conditions for the project

#9 · created Mar 18, 2019 by Philippe BORDRON
- CLOSED
- 1
- 0
updated Apr 29, 2019
creation of unknown.fastq as an option in an analysis

#7 · created Mar 21, 2018 by Eric CHARPENTIER
- CLOSED
- 1
- 0
updated Apr 16, 2019
make UMI unique for sample AND gene

#5 · created Nov 09, 2017 by Eric CHARPENTIER
- CLOSED
- 1
updated Apr 16, 2019
compress generated fastq files

#3 · created Oct 25, 2017 by Eric CHARPENTIER
- CLOSED
- 0
updated Nov 09, 2017
compress sam files

#4 · created Oct 25, 2017 by Eric CHARPENTIER
- CLOSED
- 0
updated Nov 09, 2017