SRP-pipeline issueshttps://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline/-/issues2022-07-26T12:21:50Zhttps://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline/-/issues/20better report for reference used2022-07-26T12:21:50ZEric CHARPENTIERbetter report for reference usedDescribe the reference used in a better way in the HTML report.Describe the reference used in a better way in the HTML report.https://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline/-/issues/19removing folding of fasta files in polyAstrip2020-10-06T07:20:12ZEric CHARPENTIERremoving folding of fasta files in polyAstripAll references undergo a polyAstrip rule in order to remove the poly A queues in the sequences. The fasta is linearized and thus a folding of 60 characters is performed afterwards. The problem occurs when the track names are greater than...All references undergo a polyAstrip rule in order to remove the poly A queues in the sequences. The fasta is linearized and thus a folding of 60 characters is performed afterwards. The problem occurs when the track names are greater than 60 characters. These track names are also folded.Eric CHARPENTIEREric CHARPENTIERhttps://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline/-/issues/11Trigger creation of unknown.fastq2019-05-27T15:08:17ZEric CHARPENTIERTrigger creation of unknown.fastqWrite a switch to turn off creation of unknown.fastq which is not usefull when analyzing small part of a plate.Write a switch to turn off creation of unknown.fastq which is not usefull when analyzing small part of a plate.Eric CHARPENTIEREric CHARPENTIERhttps://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline/-/issues/6compare detected vs undetected transcript sizes2018-01-10T09:42:34ZEric CHARPENTIERcompare detected vs undetected transcript sizesIt seems small transcripts are not detected in DGESeq analysis.It seems small transcripts are not detected in DGESeq analysis.