Correcting wrong end lines of evaluation scripts and correcting the R script...

Correcting wrong end lines of evaluation scripts and correcting the R script that couldn't parse correctly recently generated csv files

moclodash-evaluation/fr.inria.diverse.cloning.benchmark.tool.feature/rootfiles/evaluation-scripts/plot-all

-#!/bin/bash
-
-RARGS=""
-for i in "$@"
-do
-    RARGS="$RARGS $i"
-done
-
-R --no-save --args $RARGS < ./process-data.R
-
-ls *.pdf | xargs -I '{}' pdfcrop '{}' '{}'
-
-mv *.pdf benchmarktool-workingdir
+#!/bin/bash
+
+RARGS=""
+for i in "$@"
+do
+    RARGS="$RARGS $i"
+done
+
+R --no-save --args $RARGS < ./process-data.R
+
+ls *.pdf | xargs -I '{}' pdfcrop '{}' '{}'
+
+mv *.pdf benchmarktool-workingdir

moclodash-evaluation/fr.inria.diverse.cloning.benchmark.tool.feature/rootfiles/evaluation-scripts/run-all

-#!/bin/bash
-
-DIR=`dirname $0`
-
-############### Must point to the folder of the evaluation tool
-BENCHTOOLDIR="$DIR/.."
-###############
-
-BENCHTOOL="$BENCHTOOLDIR/cloning-benchmark"
-TOOL="$BENCHTOOL run nopause"
-OUTPUTFOLDER=./benchmarktool-workingdir
-
-# Parsing arguments (osgi bundles) in order to generate an argument for the evaluation tool
-BUNDLES=""
-for arg in "$@"
-do
-    BUNDLES="$BUNDLES$arg,"
-done
-
-# To reset registered OSGi bundles
-rm -rf "$BENCHTOOLDIR/configuration/org.eclipse.osgi"
-
-$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 1 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal1.csv --dumpsFolder=/tmp2/cloningDumpsAll
-#$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 10 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal10.csv --dumpsFolder=/tmp2/cloningDumpsAll
-#$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 100 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal100.csv --dumpsFolder=/tmp2/cloningDumpsAll
-$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 1000 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal1000.csv --dumpsFolder=/tmp2/cloningDumpsAll
-#$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 10000 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal10000.csv --dumpsFolder=/tmp2/cloningDumpsAll
+#!/bin/bash
+
+DIR=`dirname $0`
+
+############### Must point to the folder of the evaluation tool
+BENCHTOOLDIR="$DIR/.."
+###############
+
+BENCHTOOL="$BENCHTOOLDIR/cloning-benchmark"
+TOOL="$BENCHTOOL run nopause"
+OUTPUTFOLDER=./benchmarktool-workingdir
+
+# Parsing arguments (osgi bundles) in order to generate an argument for the evaluation tool
+BUNDLES=""
+for arg in "$@"
+do
+    BUNDLES="$BUNDLES$arg,"
+done
+
+# To reset registered OSGi bundles
+rm -rf "$BENCHTOOLDIR/configuration/org.eclipse.osgi"
+
+#$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 1 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal1.csv --dumpsFolder=/tmp2/cloningDumpsAll
+#$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 10 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal10.csv --dumpsFolder=/tmp2/cloningDumpsAll
+#$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 100 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal100.csv --dumpsFolder=/tmp2/cloningDumpsAll
+$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 1000 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal1000.csv --dumpsFolder=/tmp2/cloningDumpsAll
+#$TOOL --benchmarkMetamodels=$BUNDLES --nbClones 10000 --nbtries 5 --outputFile $OUTPUTFOLDER/resultsFinal10000.csv --dumpsFolder=/tmp2/cloningDumpsAll