Explore projects

Snakemake for 3' Sequencing RNA Profiling analysis. https://bio.tools/3SRP

This pipeline aims to provide unsupervised data analysis from Singlecell RNAseq data. The alignment is done with Tophat2 followed by htseqcount. After filtering, DeSeq2 and Vst are applied. Finally, the unsupervised analysis is done with WGCNA.

RNAseq pipeline for gene expression quantification.

Bulk RNA-seq secondary analysis workflow

Microbiome analysis

From fastq to Allelic expression with GATK

R functions that provide utilities for RNA-Seq analyses.