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This pipeline aims to provide unsupervised data analysis from Singlecell RNAseq data. The alignment is done with Tophat2 followed by htseqcount. After filtering, DeSeq2 and Vst are applied. Finally, the unsupervised analysis is done with WGCNA.
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Pipeline for exome sequencing with snakemake (BWA->HaplotypeCaller->VEP+GnomAD)
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Yves-Henri SANEJOUAND / Sequences
CeCILL Free Software License Agreement v2.0Protein sequence analysis
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Yves-Henri SANEJOUAND / Misc
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From fastq to Allelic expression with GATK
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