Commit 5f5efbad authored by lindenb's avatar lindenb
Browse files

cont

parent 4e0f30ae
...@@ -384,16 +384,13 @@ Provides statistics for a single database, including lists of indexing fields an ...@@ -384,16 +384,13 @@ Provides statistics for a single database, including lists of indexing fields an
%%\end{frame} %%\end{frame}
%%\begin{frame}[fragile] %%\begin{frame}[fragile]
\subsection{EInfo} {\bf Base URL}: \url{http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi}
Base URL:
\small
\url{http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi}
%%\end{frame} %%\end{frame}
%%\begin{frame}[fragile] %%\begin{frame}[fragile]
\subsection{EInfo}
\subsubsection{XML Ouput} \subsubsection{XML Ouput}
\url{http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi} \url{http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi}
...@@ -646,6 +643,10 @@ Base URL ...@@ -646,6 +643,10 @@ Base URL
%%\begin{frame}[fragile] %%\begin{frame}[fragile]
\subsubsection{Searching for 'Mammuthus primigenius' } \subsubsection{Searching for 'Mammuthus primigenius' }
{\bf term="Mammuthus primigenius"[ORGN]}
\begin{lstlisting}[language=bash,basicstyle=\tiny,breaklines=true] \begin{lstlisting}[language=bash,basicstyle=\tiny,breaklines=true]
curl "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide&term=%22Mammuthus%20primigenius%22%5BORGN%5D" |\ curl "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide&term=%22Mammuthus%20primigenius%22%5BORGN%5D" |\
xmllint --format - xmllint --format -
...@@ -787,6 +788,9 @@ xmllint --format - ...@@ -787,6 +788,9 @@ xmllint --format -
\end{lstlisting} \end{lstlisting}
%%\end{frame} %%\end{frame}
\bf{ Exercice:} quel est le nombre de publications dans pubmed pour les années 1970 à 2015 ?
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% %%
%% ESummary %% ESummary
...@@ -972,7 +976,7 @@ Base URL: ...@@ -972,7 +976,7 @@ Base URL:
%%\end{frame} %%\end{frame}
%%\begin{frame}[fragile] %%\begin{frame}[fragile]
\subsection{EFetch}
\subsubsection{Retrieve nucleotide gi=507866428 as ASN.1} \subsubsection{Retrieve nucleotide gi=507866428 as ASN.1}
Default Default
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