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Pierre LINDENBAUM
tdncbi
Commits
5f5efbad
Commit
5f5efbad
authored
Sep 29, 2015
by
lindenb
Browse files
cont
parent
4e0f30ae
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1
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tdncbi.tex
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5f5efbad
...
@@ -384,16 +384,13 @@ Provides statistics for a single database, including lists of indexing fields an
...
@@ -384,16 +384,13 @@ Provides statistics for a single database, including lists of indexing fields an
%%\end{frame}
%%\end{frame}
%%\begin{frame}[fragile]
%%\begin{frame}[fragile]
\subsection
{
EInfo
}
{
\bf
Base URL
}
:
\url
{
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi
}
Base URL:
\small
\url
{
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi
}
%%\end{frame}
%%\end{frame}
%%\begin{frame}[fragile]
%%\begin{frame}[fragile]
\subsection
{
EInfo
}
\subsubsection
{
XML Ouput
}
\subsubsection
{
XML Ouput
}
\url
{
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi
}
\url
{
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/einfo.fcgi
}
...
@@ -646,6 +643,10 @@ Base URL
...
@@ -646,6 +643,10 @@ Base URL
%%\begin{frame}[fragile]
%%\begin{frame}[fragile]
\subsubsection
{
Searching for 'Mammuthus primigenius'
}
\subsubsection
{
Searching for 'Mammuthus primigenius'
}
{
\bf
term="Mammuthus primigenius"[ORGN]
}
\begin{lstlisting}
[language=bash,basicstyle=
\tiny
,breaklines=true]
\begin{lstlisting}
[language=bash,basicstyle=
\tiny
,breaklines=true]
curl "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide
&
term=
%22Mammuthus%20primigenius%22%5BORGN%5D" |\
curl "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=nucleotide
&
term=
%22Mammuthus%20primigenius%22%5BORGN%5D" |\
xmllint --format -
xmllint --format -
...
@@ -787,6 +788,9 @@ xmllint --format -
...
@@ -787,6 +788,9 @@ xmllint --format -
\end{lstlisting}
\end{lstlisting}
%%\end{frame}
%%\end{frame}
\bf
{
Exercice:
}
quel est le nombre de publications dans pubmed pour les années 1970 à 2015 ?
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%
%%
%% ESummary
%% ESummary
...
@@ -972,7 +976,7 @@ Base URL:
...
@@ -972,7 +976,7 @@ Base URL:
%%\end{frame}
%%\end{frame}
%%\begin{frame}[fragile]
%%\begin{frame}[fragile]
\subsection
{
EFetch
}
\subsubsection
{
Retrieve nucleotide gi
=
507866428
as ASN.
1
}
\subsubsection
{
Retrieve nucleotide gi
=
507866428
as ASN.
1
}
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