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Add coverm, change eggnog command (genes_collection) and modify fastQ_screen DB download

Hugo LEFEUVRE a demandé de fusionner debug_hugo vers master
  • Add coverm for genes and genomes abundances, comment genes abundance with generate_raw_tables.py
  • Change eggnog command (genes_collection), use faa file instead of fnn file
  • Modify fastQ_screen DB download, there was an issue with a mv command that wanted to move a directory created by fastq_screen command in a repository where the same directory was already created by snakemake. Changes in QC.smk but also into .configtemplate.yaml into

Rapports de requête de fusion