Megahit presets option
megahit command inside the assembly module is written with the parameter --presets meta-sensitive
.
While it offers sensitivity to assembly, neither large co-assemblies nor too complex metagenomics samples are well-suited to use this preset option, as the computation time and the complexity may scale quickly. In these cases, --presets meta-sensitive
should be the preferred option instead.
As the config file was written in such a complete form to allow full parameterization, megahit presets
option should be leave to the user's choice.