Need to choose between pip install or conda
Currently pip install genosysmics/
command install genosysmics package in path like HOME/<conda_folder>/lib/python3.X/site-packages/genosysmics
.
It means that pip
does not install genosysmics
within the genosys
conda environment the README asked to build for it.
Although this option helps to put genosysmics module in the user $PATH, the conda environment genosys
remains empty, as seen in the following example :
(genosys) [bchurcheward@login-01 ~]$ conda list
# packages in environment at /sandbox/users/bchurcheward/miniconda3/envs/genosys:
#
# Name Version Build Channel
As a minor consequence, it also creates copies of the files located within the git folder, as the pip install command cannot be performed without the source code in the git folder. Also we need to install it again using pip after each code modification.
Working in well-defined conda environment is useful with snakemake workflows, but currently the genosys
environment is useless.