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Created date
Adapt to snakemake 7.32.4 + comment CAT and deepMassed part because they don't actually work
!18
· created
Mar 03, 2025
by
Hugo LEFEUVRE
Merged
updated
Mar 03, 2025
Update setup version
!17
· created
Feb 11, 2025
by
Hugo LEFEUVRE
Merged
updated
Feb 11, 2025
DAS Tool can be used with genomes_collection part and remove some useless print and commented lines
!16
· created
Feb 10, 2025
by
Hugo LEFEUVRE
Merged
updated
Feb 10, 2025
New binning strategie and tools and new bin refinement tool, new ARGs and MGEs detection tools
!15
· created
Jan 31, 2025
by
Hugo LEFEUVRE
New features
Merged
updated
Jan 31, 2025
Create only classified taxo file
!14
· created
Oct 01, 2024
by
Hugo LEFEUVRE
New features
Merged
updated
Oct 01, 2024
Add CDS option to search_orthology rule
!13
· created
Sep 30, 2024
by
Hugo LEFEUVRE
Bug
Merged
updated
Sep 30, 2024
Large index and genes collection option + genes collection modification
!12
· created
Sep 19, 2024
by
Hugo LEFEUVRE
Merged
updated
Sep 19, 2024
Change yml into yaml motus rule and remove img output fastqscreen
!11
· created
Jul 18, 2024
by
Hugo LEFEUVRE
Merged
updated
Jul 18, 2024
delete illumina1_3 FQscreen parameter + add img output
!10
· created
Jul 16, 2024
by
Hugo LEFEUVRE
Bug
Merged
updated
Jul 16, 2024
Slurm compatibility, tools version in yaml files and minor sripts modifications
!9
· created
Jul 11, 2024
by
Hugo LEFEUVRE
New features
Merged
updated
Jul 11, 2024
Revert "Changes for Slurm config and smk version 7.32.4"
!8
· created
Jun 21, 2024
by
Hugo LEFEUVRE
debug_hugo
Merged
updated
Jun 21, 2024
Modify GTDBtk version and Classify rules + add coverm calculation options
!7
· created
May 15, 2024
by
Hugo LEFEUVRE
Bug
New features
Merged
updated
May 15, 2024
Rule coverage_statistics + add directory to path
!6
· created
Apr 29, 2024
by
Hugo LEFEUVRE
Bug
Merged
updated
Apr 29, 2024
Add coverm, change eggnog command (genes_collection) and modify fastQ_screen DB download
!5
· created
Apr 24, 2024
by
Hugo LEFEUVRE
Merged
Approved
updated
Apr 24, 2024
Change paths
!4
· created
Apr 16, 2024
by
Hugo LEFEUVRE
Bug
Merged
Approved
updated
Apr 16, 2024
Debug MAGNETO
!3
· created
Mar 28, 2024
by
Hugo LEFEUVRE
Bug
Merged
updated
Apr 08, 2024
modified README for better installation procedure, modified sge config for bird
!2
· created
Jul 21, 2023
by
Eric CHARPENTIER
Merged
updated
Jul 21, 2023
Snakecore
!1
· created
Apr 16, 2020
by
Erwan DELAGE
Merged
updated
Apr 16, 2020
