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:warning: Here is the current installation method, but we are working on packaging the workflow so that it is directly available in Bioconda :warning:
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# Dependencies
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A working installation of **conda** and **git** is mandatory to build magneto. If you have **mamba** already install on your system, the creation of the main environment will be faster.
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* python 3.7+
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* python 2.7
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* snakemake 6.3.0
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* python 3.8+
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* snakemake 7.32.4
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* mamba 1.5.8
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* conda 4.10.3
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* click 8.01
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| ... | ... | @@ -16,8 +13,12 @@ The default conda libraries management for snakemake is mamba, since a couple of |
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Except if you use your own databases or already have downloaded them, MAGNETO will also require an internet connection.
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# Installation
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## Main conda environment installation
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## Install from bioconda
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```bash
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conda install -c bioconda magneto
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```
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## Install from source
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### Main conda environment installation
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Start by creating a conda environment containing snakemake, mamba and the python module click:
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| ... | ... | |
| ... | ... | |
