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```
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magneto run qc --config target=single_assembly **snakemake.args
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```
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# Quality check and decontamination #
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Low quality sequence, artefacts , sequencing adaptors , duplicates , contaminants and others may compromised downstream analysis. Thus, pre-process metagenomics data is necessary. The QC modules apply a quality filter and a contaminant filter on metagenomic reads.
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| ... | ... | |
| ... | ... | |
