Modules/QC.md

@@ -33,10 +33,10 @@ fastQscreen process one fastq file at once. Therefore, for paired-end data, fast
 
 In case of paired-end data , Reverse and forward reads might be merged. This is done after the QC and contaminant removal. Reads that fail to merge remain in their respective file whereas merged reads are stored within the unpair file.
 
-------
-------
-
+## Output ##
 Raw reads and processed reads are stores within the reads directory :
+
+```
 reads/
 └── PE
     ├── ESM5MEBG
@@ -46,6 +46,6 @@ reads/
     │   ├── ESM5MEBG_R2.filtered.fastq.gz
     │   └── ESM5MEBG_unpaired.filtered.fastq.gz
     └── ...
-
+```
 
 ![dag_qc.svg](uploads/957ffb7b53f8ef601a141db07b91dabf/dag_qc.svg)