Modules/QC.md

@@ -9,16 +9,16 @@ Reads quality and filtering is performed using [fastp](https://github.com/OpenGe
 fastp filtering produce one filtered file by input (i.e <samples>_R1.filtered.fq <samples>_R2.filtered.fq or <samples>_SE.filtered.fq). In case of paired-end data, a third file containing newly unpaired reads is produced. 
 
 editable QC parameters are listed below :
-- trimming_R1_front : 0 #[int] trim reads from front for R1 or SE
-- trimming_R1_tail : 0 #[int] trim reads from tail for R1 or SE
-- trimming_R2_front : 0 #[int] trim reads from front for R2
-- trimming_R2_tail : 0 #[int] trim reads from tail for R2
-- polyG_min_len : 10 #[int] minimum number of base to consider for polyG trimming
-- min_phred_score : 30 #[int] minimum quality per base
-- unqualified_bases : 40 #[0-100] minimum percentage of qualified bases
-- max_N : 5 #[int] max number of N base
-- average_Phred : 0 #[int] average reads quality
-- minimum_reads_length : 15 #[int] minimum reads length
+- trimming_R1_front : 0         #[int] trim reads from front for R1 or SE
+- trimming_R1_tail : 0          #[int] trim reads from tail for R1 or SE
+- trimming_R2_front : 0         #[int] trim reads from front for R2
+- trimming_R2_tail : 0          #[int] trim reads from tail for R2
+- polyG_min_len : 10            #[int] minimum number of base to consider for polyG trimming
+- min_phred_score : 30          #[int] minimum quality per base
+- unqualified_bases : 40        #[0-100] minimum percentage of qualified bases
+- max_N : 5                     #[int] max number of N base
+- average_Phred : 0             #[int] average reads quality
+- minimum_reads_length : 15     #[int] minimum reads length
 
 For more details about QC parameters, please see [fastp's documentation](https://github.com/OpenGene/fastp)