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- co-binning from single-assembly
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- co-binning from co-assembly
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Edit config file to choose one or multiple strategies
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## Single-binning ##
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Single-binning consist in the reconstruction of genomes bins per assembly. Cluster reads or Sample reads are mapped against their assembly (cluster assembly or sample assembly). Genosysmics use "jgi_summarize_bam_contig_depths" metabat utility to recover depth of coverage of each contig. Then, genomes bins are reconstructed from the specified assembly.
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