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title: Binning
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---
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MAGs are reconstructed from metagenome assemblies using several binning tools :
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- [MetaBAT](https://bitbucket.org/berkeleylab/metabat/src/master/)
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- [Concoct](https://github.com/BinPro/CONCOCT)
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# Binning Strategies #
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Magneto offers two binning strategies named single sample binning (SB) and co-abundance binning (CB), together with assembly strategies (single and co-assembly) there are four ways to recovers MAGs from metagenomes :
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- single-binning from single-assembly (**SASB**)
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- single-binning from co-assembly (**SACB**)
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- co-abundance binning from single-assembly (**CASB**)
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- co-abundance from co-assembly (**CACB**)
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- single-binning (SB) from single-assembly (SA) (**SASB**)
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- co-abundance binning (CB) from single-assembly (SA) (**SACB**)
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- single binning (SB) from co-assembly (CA) (**CASB**)
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- co-abundance binning (CB) from co-assembly (CA) (**CACB**)
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Edit [config](Magneto-configuration) file to choose one or multiple strategies.
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