Modules/genomes_collection.md

@@ -3,10 +3,11 @@ title: Genomes collection
 ---
 
 
+
 At this stage of the workflow, we have a number of bins obtained from the assembly of sample reads. The next step is to check the quality of this bins, then obtain their abundance and annotate them functionally and taxonomically.
 
 ```
-magneto run genomes --config target=single_assembly **snakemake.args
+magneto run genomes --strategies SASB,SACB --profile config/slurm/ **snakemake.args
 ```
 
 ### Genomes quality and dereplication ###
@@ -60,3 +61,4 @@ genomes_collection/tables/
 ```
 
 [Previous - Binning (Module)](Modules/binning)
+[Next - All (Module)](Modules/all)