|
|
|
---
|
|
|
|
title: Motus
|
|
|
|
---
|
|
|
|
# Metagenomic samples mOTUs profiling #
|
|
|
|
|
|
|
|
This module estimates the relative taxonomic abundance of known and currently unknown microbial community members from raw reads.
|
|
|
|
|
|
|
|
mOTUs are operational taxonomic unit based on 10 universal markers genes (MGs). The motus module run [mOTUs](https://motu-tool.org/index.html), a dedicated tool for mOTUs profiling.
|
|
|
|
|
|
|
|
This mOTU profiler (2.5.0) map reads against a database made of 2297 meta-mOTUs (fetch from public metagenomes, mOTUs without known reference) and of 11915 ref-mOTUs (fetch from public reference genomes). Alignement provide abundance estimation and taxonomic annotation of reads. See [mOTUs documentation](https://github.com/motu-tool/mOTUs_v2) for details.
|
|
|
|
|
|
|
|
The motus module profile each samples then merge profiles.
|
|
|
|
|
|
|
|
genosysmics run motus **snakemake.args
|
|
|
|
magneto run motus **snakemake.args
|
|
|
|
|
|
|
|
mOTUs module will implicitly ran the QC module if --skip-qc flag is not specified
|
|
|
|
mOTUs module will implicitly ran the QC module if `--skip-qc` flag is not specified
|
|
|
|
|
|
|
|
### output : ###
|
|
|
|
|
| ... | ... | @@ -26,5 +31,6 @@ mOTUs module will implicitly ran the QC module if --skip-qc flag is not specifie |
|
|
|
|
|
|
|
|
|
|
|
-----
|
|
|
|
[Previous](Modules/QC)
|
|
|
|
[Next](Modules/simka) |
|
|
\ No newline at end of file |
|
|
|
[Previous - QC (Module)](Modules/QC)
|
|
|
|
|
|
|
|
[Next - Simka (Module)](Modules/simka) |
|
|
\ No newline at end of file |
