... | ... | @@ -95,7 +95,7 @@ optional arguments: |
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-p {refseq,gencode,ensembl}, --provenance {refseq,gencode,ensembl}
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Provenance of the reference transcriptome to be
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downloaded (default : refseq).
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-s {human,mouse,rat}, --species {human,mouse,rat}
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-s {human,mouse,rat,cow}, --species {human,mouse,rat}
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Species of the reference transcriptome to be
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downloaded (default: human). If you need another
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species, you're going to have to build your reference
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... | ... | @@ -109,7 +109,7 @@ optional arguments: |
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-n REFNAME, --name REFNAME
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Name of the new reference (default to standard last
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build name according to chosen species. Ex:
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hg38,mm10,rn6). This name should be the same specified
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hg38,mm10,rn6,cow). This name should be the same specified
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in the samplesheet describing the samples.
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-u PROXY, --use-proxy PROXY
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Use univ-nantes proxy
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... | ... | |