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Ajout de outSAMattrRGline cf :...

Ajout de outSAMattrRGline pour que les noms des échantillons soient contenus dans les BAM. Sinon ça plante pour des outils de gatk https://gatkforums.broadinstitute.org/gatk/discussion/6472/read-groups

pas testé.

cf : http://labshare.cshl.edu/shares/gingeraslab/www-data/dobin/STAR/STAR.posix/doc/STARmanual.pdf

string(s): SAM/BAM read group line. The first word contains the read groupidentifier and must start with ”ID:”, e.g. –outSAMattrRGline ID:xxx CN:yy”DS:z z z”.xxx will be added as RG tag to each output alignment. Any spaces in the tagvalues have to be double quoted

Edited by Pierre LINDENBAUM

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