... | ... | @@ -7,45 +7,24 @@ The report file is an html file which can be opened with a browser. It summarize |
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## The samplesheet
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In the **Samples** section, the "display table" button enables to reveal the samplesheet used in the analysis.
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In the **Samples** section displays the samplesheet used in the analysis.
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![samplesheet](../images/report/samplesheet.png)
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The table can be searched, filtered or ordered at will.
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## The FastQC summary
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The interactive graph in the **FastQC summary** section enables to see the total number of reads assigned to every sample in order to see the homogeneity between samples.
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![fastqc_summary](../images/report/fastqc.png)
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The points can be hovered in order to get the real values for each sample.
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## The MultiQC summary
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The **MultiQC summary** section is an iframe which embedes the MultiQC report of the output structure of the pipeline.
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![mutliqc](../images/report/multiqc.png)
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## The read distribution
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The **Read Distribution** section is an interactive graph presenting the results of the [well_summary](analysis/primary_analysis#expressionMatrix) file. Details for each sample can be seen by hovering the histogram bars of the plot.
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![readDistribution](../images/report/reads.png)
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## The genes detected
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The **Genes Detected** section enables to see the number of genes with at least one count for each sample.
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![genes_detected](../images/report/genes.png)
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## Sample filtering
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The **Sample filtering** section lets you know if samples have been filter out of the analysis because of their insufficient number of UMIs or detected genes.
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![genesDetected](../images/report/genesFound.png)
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## PCA and sample correlation heatmap
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The sections **PCA** and **Sample correlation** show the plots made in the [secondary analysis](analysis/secondary_analysis).
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