Snakefile error
I am attempting to use MAGNETO on my University's high performance computing cluster. I didn't have any installation errors and I can run magneto --help but when I attempt to run the following, I get an error. I have attached a copy of my config.yaml file.
(magenv) [d12g177@tempest-login beef_rumen]$ magneto run all --profile /home/d12g177/projects/beef_rumen/config/config.yaml --config target=all --profile /home/d12g177/projects/beef_rumen/config/config.yaml --printshellcmds Error: profile given but no config.yaml found. Profile has to be given as either absolute path, relative path or name of a directory available in either /etc/xdg/snakemake or /home/d12g177/.config/snakemake. Traceback (most recent call last): File "/home/d12g177/.conda/envs/magenv/bin/magneto", line 8, in sys.exit(cli()) File "/home/d12g177/.conda/envs/magenv/lib/python3.8/site-packages/click/core.py", line 1130, in call return self.main(*args, **kwargs) File "/home/d12g177/.conda/envs/magenv/lib/python3.8/site-packages/click/core.py", line 1055, in main rv = self.invoke(ctx) File "/home/d12g177/.conda/envs/magenv/lib/python3.8/site-packages/click/core.py", line 1657, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/home/d12g177/.conda/envs/magenv/lib/python3.8/site-packages/click/core.py", line 1404, in invoke return ctx.invoke(self.callback, **ctx.params) File "/home/d12g177/.conda/envs/magenv/lib/python3.8/site-packages/click/core.py", line 760, in invoke return __callback(*args, **kwargs) File "/home/d12g177/.conda/envs/magenv/lib/python3.8/site-packages/magneto/magneto.py", line 179, in run subprocess.check_call(cmd, shell=True) File "/home/d12g177/.conda/envs/magenv/lib/python3.8/subprocess.py", line 364, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command 'snakemake --snakefile /home/d12g177/.conda/envs/magenv/lib/python3.8/site-packages/magneto/Snakefile --configfile './config/config.yaml' --directory '.' --use-conda --config target=all --profile /home/d12g177/projects/beef_rumen/config/config.yaml --printshellcmds ' returned non-zero exit status 1. (magenv) [d12g177@tempest-login beef_rumen]$