Problem with Workflow and/or Rule
Hi, I have been trying to run MAGNETO in a cluster (with the dummy dataset) and I always get the following error message: "Rule parameter depends on checkpoint but checkpoint output is not defined as input file for the rule. Please add the output of the respective checkpoint to the rule inputs." This error occurs regardless if I use the configuration for SLURM or run it as local machine. I have also tried to run MAGNETO in my local computer, and the error persists. I suspect it is due to the version of Snakemake, albeit I have tried to install the specified version (6.3.0), and it is not possible given that it requires Python 3.4 which is not available through Conda.
Thank you in advance for your help.