Modify GTDBtk version and Classify rules + add coverm calculation options (!7) · Requêtes de fusion · bird_pipeline_registry / MAGNETO · GitLab

Nantes Université

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Hugo LEFEUVRE a demandé de fusionner debug_hugo vers master mai 15, 2024

Changes for taxonomy annotation with GTDBtk :

Change the tool version (2.4.0) and the Database (release220)
Change the way fasta.gz files are concatenated for classify rule
Add a shell line in classify removing fasta.gz files that are empty

Add coverm calculation options in config file