v1.3
New features
- added new script
SCRIPTS/make_ref.py
to build references from multiple source (gencode, ensembl, refseq). See wiki page Creating a manual reference. - added new statistics in logs created by
SCRIPTS/count.py
to visualize the number of reads aligned on too many transcripts and reads containing too many mismatches. - added logs in many secondary analysis scripts.
Bug fix
- fixed multiqc reports when analyzing a high number of sample (many plates).
- made the new
SCRIPTS/make_multiplates_config
script backward compatible with ancient configuration files. - fixed bug in README files.