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Toolbox for secondary analysis after using MicroSysMics https://gitlab.univ-nantes.fr/bird_pipeline_registry/microSysMics

From fastq to Allelic expression with GATK

Notebook M2BB stage Institut du Thorax

M2 Degre project have to aim to isolate CNV share by patient from family with possibility to filter CNV on lenght, frequency from GnomAD v2.1.1 and interest genome region. Develop by Romain LAUNAY and Pierre OLCHESQUI with participation of Xavier L G

RNAseq pipeline for gene expression quantification.

Bulk RNA-seq secondary analysis workflow

Atac-Seq pipeline in snakemake

Archive repository of MEDUSA code (see https://hal.archives-ouvertes.fr/hal-00839321) for details

RNAseq pipeline for gene expression quantification.

Musclemotion repo for easy sharing and modifying

Scripts used to pre-process fastq and run dada2 on TARA data