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This pipeline aims to provide unsupervised data analysis from Singlecell RNAseq data. The alignment is done with Tophat2 followed by htseqcount. After filtering, DeSeq2 and Vst are applied. Finally, the unsupervised analysis is done with WGCNA.

RNAseq pipeline for gene expression quantification.

RNAseq pipeline for gene expression quantification.

RNAseq pipeline for gene expression quantification.

RNAseq pipeline for gene expression quantification.

Notebook M2BB stage Institut du Thorax

Musclemotion repo for easy sharing and modifying